IL_4W2H_368

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4W2H|1|DA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_368 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.3922

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4W2H|1|DA|C|2129
4W2H|1|DA|U|2130
4W2H|1|DA|G|2131
4W2H|1|DA|U|2132
4W2H|1|DA|G|2133
4W2H|1|DA|A|2134
4W2H|1|DA|A|2135
4W2H|1|DA|C|2136
*
4W2H|1|DA|G|2155
4W2H|1|DA|G|2156
4W2H|1|DA|G|2157
4W2H|1|DA|A|2158
4W2H|1|DA|G|2159

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains