3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4W4G|1|QA|A|532, 4W4G|1|QA|U|534, 4W4G|1|QA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_022 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1291
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4W4G|1|QA|G|515
4W4G|1|QA|U|516
4W4G|1|QA|G|517
4W4G|1|QA|C|518
4W4G|1|QA|C|519
4W4G|1|QA|A|520
4W4G|1|QA|G|521
*
4W4G|1|QA|C|528
4W4G|1|QA|G|529
4W4G|1|QA|G|530
4W4G|1|QA|U|531
4W4G|1|QA|A|532
4W4G|1|QA|A|533
4W4G|1|QA|U|534
4W4G|1|QA|A|535
4W4G|1|QA|C|536

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QC
30S ribosomal protein S3
Chain QD
30S ribosomal protein S4
Chain QL
30S ribosomal protein S12
Chain QY
Host inhibition of growth B

Coloring options:


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