IL_4W4G_053

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_053 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1159

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4W4G|1|QA|C|1303
4W4G|1|QA|G|1304
4W4G|1|QA|G|1305
4W4G|1|QA|A|1306
4W4G|1|QA|U|1307
4W4G|1|QA|U|1308
*
4W4G|1|QA|A|1329
4W4G|1|QA|U|1330
4W4G|1|QA|G|1331
4W4G|1|QA|A|1332
4W4G|1|QA|A|1333
4W4G|1|QA|G|1334

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein Thx