IL_4WCP_002

3D structure

PDB id

4WCP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408me1A-mutant ribosomal decoding site

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

C(1MA)C*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCP_002 not in the Motif Atlas

Geometric match to IL_4V88_411

Geometric discrepancy: 0.396

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4WCP|1|A|C|7
4WCP|1|A|1MA|8
4WCP|1|A|C|9
*
4WCP|1|B|G|39
4WCP|1|B|A|40
4WCP|1|B|A|41
4WCP|1|B|G|42

Current chains

Chain A

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Chain B

RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*(1MA)P*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')

Nearby chains