IL_4WF1_232

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUUU*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_232 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.3623

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WF1|1|CA|G|1006
4WF1|1|CA|U|1007
4WF1|1|CA|U|1008
4WF1|1|CA|U|1009
*
4WF1|1|CA|G|1020
4WF1|1|CA|A|1021
4WF1|1|CA|A|1022
4WF1|1|CA|U|1023

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14