IL_4WF1_328

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

CUG*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_328 not in the Motif Atlas

Geometric match to IL_364D_004

Geometric discrepancy: 0.1927

The information below is about IL_364D_004

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WF1|1|DA|C|1768
4WF1|1|DA|U|1769
4WF1|1|DA|G|1770
*
4WF1|1|DA|U|1982
4WF1|1|DA|G|1983
4WF1|1|DA|G|1984

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA