IL_4WF1_391

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4WF1|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_391 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1155

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4WF1|1|CA|U|684
4WF1|1|CA|G|685
4WF1|1|CA|U|686
4WF1|1|CA|A|687
4WF1|1|CA|G|688
*
4WF1|1|CA|C|699
4WF1|1|CA|G|700
4WF1|1|CA|U|701
4WF1|1|CA|A|702
4WF1|1|CA|G|703
4WF1|1|CA|A|704
4WF1|1|CA|G|705
4WF1|1|CA|A|706

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA