IL_4WF1_392

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GUGG*CACAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WF1_392 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3745

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WF1|1|CA|G|951
4WF1|1|CA|U|952
4WF1|1|CA|G|953
4WF1|1|CA|G|954
*
4WF1|1|CA|C|1226
4WF1|1|CA|A|1227
4WF1|1|CA|C|1228
4WF1|1|CA|A|1229
4WF1|1|CA|C|1230

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19