IL_4WF1_417
3D structure
- PDB id
- 4WF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to negamycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.09 Å
Loop
- Sequence
- CCUUGAUGUGUAGGAUAG*CCUUUAAUG
- Length
- 27 nucleotides
- Bulged bases
- 4WF1|1|BA|U|2111, 4WF1|1|BA|G|2116, 4WF1|1|BA|U|2118, 4WF1|1|BA|A|2119
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WF1_417 not in the Motif Atlas
- Homologous match to IL_5J7L_397
- Geometric discrepancy: 0.2623
- The information below is about IL_5J7L_397
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54737.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
4WF1|1|BA|C|2103
4WF1|1|BA|C|2104
4WF1|1|BA|U|2105
4WF1|1|BA|U|2106
4WF1|1|BA|G|2107
4WF1|1|BA|A|2108
4WF1|1|BA|U|2109
4WF1|1|BA|G|2110
4WF1|1|BA|U|2111
4WF1|1|BA|G|2112
4WF1|1|BA|U|2113
4WF1|1|BA|A|2114
4WF1|1|BA|G|2115
4WF1|1|BA|G|2116
4WF1|1|BA|A|2117
4WF1|1|BA|U|2118
4WF1|1|BA|A|2119
4WF1|1|BA|G|2120
*
4WF1|1|BA|C|2178
4WF1|1|BA|C|2179
4WF1|1|BA|U|2180
4WF1|1|BA|U|2181
4WF1|1|BA|U|2182
4WF1|1|BA|A|2183
4WF1|1|BA|A|2184
4WF1|1|BA|U|2185
4WF1|1|BA|G|2186
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain B5
- 50S ribosomal protein L1
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