IL_4WOI_030

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4WOI|1|AA|A|532, 4WOI|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_030 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1312

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WOI|1|AA|G|515
4WOI|1|AA|U|516
4WOI|1|AA|G|517
4WOI|1|AA|C|518
4WOI|1|AA|C|519
4WOI|1|AA|A|520
4WOI|1|AA|G|521
*
4WOI|1|AA|C|528
4WOI|1|AA|G|529
4WOI|1|AA|G|530
4WOI|1|AA|U|531
4WOI|1|AA|A|532
4WOI|1|AA|A|533
4WOI|1|AA|U|534
4WOI|1|AA|A|535
4WOI|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12

Chain AV

Ribosome-recycling factor