3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4WOI|1|AA|A|532, 4WOI|1|AA|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WOI_030 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1312
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4WOI|1|AA|G|515
4WOI|1|AA|U|516
4WOI|1|AA|G|517
4WOI|1|AA|C|518
4WOI|1|AA|C|519
4WOI|1|AA|A|520
4WOI|1|AA|G|521
*
4WOI|1|AA|C|528
4WOI|1|AA|G|529
4WOI|1|AA|G|530
4WOI|1|AA|U|531
4WOI|1|AA|A|532
4WOI|1|AA|A|533
4WOI|1|AA|U|534
4WOI|1|AA|A|535
4WOI|1|AA|C|536

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AD
30S ribosomal protein S4
Chain AL
30S ribosomal protein S12
Chain AV
Ribosome-recycling factor

Coloring options:


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