IL_4WOI_060

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4WOI|1|AA|A|1257, 4WOI|1|AA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_060 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1635

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4WOI|1|AA|G|1255
4WOI|1|AA|A|1256
4WOI|1|AA|A|1257
4WOI|1|AA|G|1258
*
4WOI|1|AA|C|1277
4WOI|1|AA|G|1278
4WOI|1|AA|G|1279
4WOI|1|AA|A|1280
4WOI|1|AA|C|1281
4WOI|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14