IL_4WOI_108

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4WOI|1|BA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_108 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0655

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4WOI|1|BA|G|1031
4WOI|1|BA|A|1032
4WOI|1|BA|U|1033
4WOI|1|BA|G|1034
*
4WOI|1|BA|C|1121
4WOI|1|BA|G|1122
4WOI|1|BA|C|1123

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16