IL_4WOI_223

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

4WOI|1|CA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_223 not in the Motif Atlas

Geometric match to IL_6PRV_001

Geometric discrepancy: 0.2383

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4WOI|1|CA|G|1059
4WOI|1|CA|U|1060
4WOI|1|CA|U|1061
4WOI|1|CA|G|1062
*
4WOI|1|CA|C|1076
4WOI|1|CA|A|1077
4WOI|1|CA|U|1078
4WOI|1|CA|C|1079

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CI

50S ribosomal protein L11

Chain CM

50S ribosomal protein L16