3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUAAGUAAC*GUGAAAUU
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WOI_229 not in the Motif Atlas
Geometric match to IL_4WF9_008
Geometric discrepancy: 0.2882
The information below is about IL_4WF9_008
Detailed Annotation
9x8 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_93502.1
Basepair signature
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4WOI|1|CA|A|1262
4WOI|1|CA|U|1263
4WOI|1|CA|A|1264
4WOI|1|CA|A|1265
4WOI|1|CA|G|1266
4WOI|1|CA|U|1267
4WOI|1|CA|A|1268
4WOI|1|CA|A|1269
4WOI|1|CA|C|1270
*
4WOI|1|CA|G|2010
4WOI|1|CA|U|2011
4WOI|1|CA|G|2012
4WOI|1|CA|A|2013
4WOI|1|CA|A|2014
4WOI|1|CA|A|2015
4WOI|1|CA|U|2016
4WOI|1|CA|U|2017

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain C0
50S ribosomal protein L32
Chain CE
50S ribosomal protein L4
Chain CN
50S ribosomal protein L17
Chain CS
50S ribosomal protein L22

Coloring options:


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