IL_4WOI_229
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WOI_229 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2882
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WOI|1|CA|A|1262
4WOI|1|CA|U|1263
4WOI|1|CA|A|1264
4WOI|1|CA|A|1265
4WOI|1|CA|G|1266
4WOI|1|CA|U|1267
4WOI|1|CA|A|1268
4WOI|1|CA|A|1269
4WOI|1|CA|C|1270
*
4WOI|1|CA|G|2010
4WOI|1|CA|U|2011
4WOI|1|CA|G|2012
4WOI|1|CA|A|2013
4WOI|1|CA|A|2014
4WOI|1|CA|A|2015
4WOI|1|CA|U|2016
4WOI|1|CA|U|2017
Current chains
- Chain CA
- 23S ribosomal RNA
Nearby chains
- Chain C0
- 50S ribosomal protein L32
- Chain CE
- 50S ribosomal protein L4
- Chain CN
- 50S ribosomal protein L17
- Chain CS
- 50S ribosomal protein L22
Coloring options: