IL_4WOI_266

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGA*UUGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_266 not in the Motif Atlas

Homologous match to IL_4WF9_084

Geometric discrepancy: 0.5668

The information below is about IL_4WF9_084

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WOI|1|CA|A|2097
4WOI|1|CA|U|2098
4WOI|1|CA|U|2099
4WOI|1|CA|G|2100
4WOI|1|CA|A|2101
*
4WOI|1|CA|U|2188
4WOI|1|CA|U|2189
4WOI|1|CA|G|2190
4WOI|1|CA|A|2191
4WOI|1|CA|U|2192

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CH

50S ribosomal protein L9