IL_4WOI_285

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4WOI|1|CA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_285 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0792

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WOI|1|CA|C|2636
4WOI|1|CA|U|2637
4WOI|1|CA|G|2638
4WOI|1|CA|A|2639
4WOI|1|CA|G|2640
*
4WOI|1|CA|C|2774
4WOI|1|CA|G|2775
4WOI|1|CA|A|2776
4WOI|1|CA|G|2777
4WOI|1|CA|A|2778
4WOI|1|CA|U|2779
4WOI|1|CA|G|2780
4WOI|1|CA|A|2781
4WOI|1|CA|G|2782

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CJ

50S ribosomal protein L13