IL_4WOI_288

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4WOI|1|CA|U|2689, 4WOI|1|CA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_288 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0829

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4WOI|1|CA|U|2687
4WOI|1|CA|G|2688
4WOI|1|CA|U|2689
4WOI|1|CA|U|2690
4WOI|1|CA|C|2691
*
4WOI|1|CA|G|2718
4WOI|1|CA|G|2719
4WOI|1|CA|U|2720
4WOI|1|CA|A|2721
4WOI|1|CA|G|2722

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CN

50S ribosomal protein L17

Chain CP

50S ribosomal protein L19