IL_4WOI_334

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4WOI|1|DA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_334 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0885

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4WOI|1|DA|U|684
4WOI|1|DA|G|685
4WOI|1|DA|U|686
4WOI|1|DA|A|687
4WOI|1|DA|G|688
*
4WOI|1|DA|C|699
4WOI|1|DA|G|700
4WOI|1|DA|U|701
4WOI|1|DA|A|702
4WOI|1|DA|G|703
4WOI|1|DA|A|704
4WOI|1|DA|G|705
4WOI|1|DA|A|706

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DK

30S ribosomal protein S11