IL_4WOI_383

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAGC*GCGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WOI_383 not in the Motif Atlas

Geometric match to IL_5J7L_063

Geometric discrepancy: 0.3161

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4WOI|1|CA|U|1864
4WOI|1|CA|U|1865
4WOI|1|CA|A|1866
4WOI|1|CA|G|1867
4WOI|1|CA|C|1868
*
4WOI|1|CA|G|1873
4WOI|1|CA|C|1874
4WOI|1|CA|G|1875
4WOI|1|CA|A|1876
4WOI|1|CA|A|1877
4WOI|1|CA|G|1878

Current chains

Chain CA

23S ribosomal RNA

Nearby chains