IL_4WPO_087

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4WPO|1|AA|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WPO_087 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.285

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

4WPO|1|AA|C|2151
4WPO|1|AA|U|2152
4WPO|1|AA|G|2153
4WPO|1|AA|U|2154
4WPO|1|AA|G|2155
4WPO|1|AA|A|2156
4WPO|1|AA|A|2157
4WPO|1|AA|C|2158
*
4WPO|1|AA|G|2177
4WPO|1|AA|G|2178
4WPO|1|AA|G|2179
4WPO|1|AA|A|2180
4WPO|1|AA|G|2181

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1