IL_4WPO_315
3D structure
- PDB id
- 4WPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4WPO|1|DA|A|532, 4WPO|1|DA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WPO_315 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1393
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WPO|1|DA|G|515
4WPO|1|DA|U|516
4WPO|1|DA|G|517
4WPO|1|DA|C|518
4WPO|1|DA|C|519
4WPO|1|DA|A|520
4WPO|1|DA|G|521
*
4WPO|1|DA|C|528
4WPO|1|DA|G|529
4WPO|1|DA|G|530
4WPO|1|DA|U|531
4WPO|1|DA|A|532
4WPO|1|DA|A|533
4WPO|1|DA|U|534
4WPO|1|DA|A|535
4WPO|1|DA|C|536
Current chains
- Chain DA
- 16S Ribosomal RNA
Nearby chains
- Chain DC
- 30S ribosomal protein S3
- Chain DD
- 30S ribosomal protein S4
- Chain DL
- 30S ribosomal protein S12
- Chain DV
- mRNA
- Chain DW
- Transfer RNA; tRNA
- Chain DZ
- 50S ribosomal protein L9,Elongation factor G
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