IL_4WQ1_372

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAG*CGCC

Length

9 nucleotides

Bulged bases

4WQ1|1|14|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQ1_372 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3778

The information below is about IL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4WQ1|1|14|G|1487
4WQ1|1|14|G|1488
4WQ1|1|14|U|1489
4WQ1|1|14|A|1490
4WQ1|1|14|G|1491
*
4WQ1|1|14|C|1499
4WQ1|1|14|G|1500
4WQ1|1|14|C|1501
4WQ1|1|14|C|1502

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2