IL_4WQF_084

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGU*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_084 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2949

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4WQF|1|AA|U|2121
4WQF|1|AA|G|2122
4WQF|1|AA|G|2123
4WQF|1|AA|U|2124
*
4WQF|1|AA|G|2209
4WQF|1|AA|C|2210
4WQF|1|AA|U|2211
4WQF|1|AA|G|2212

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains