IL_4WQF_332

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4WQF|1|DA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQF_332 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0986

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WQF|1|DA|G|662
4WQF|1|DA|A|663
4WQF|1|DA|G|664
4WQF|1|DA|A|665
4WQF|1|DA|G|666
*
4WQF|1|DA|U|740
4WQF|1|DA|G|741
4WQF|1|DA|G|742
4WQF|1|DA|U|743

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DF

30S ribosomal protein S6

Chain DO

30S ribosomal protein S15

Chain DR

30S ribosomal protein S18