IL_4WQR_047

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCCG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQR_047 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.3041

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4WQR|1|13|C|1006
4WQR|1|13|C|1007
4WQR|1|13|C|1008
4WQR|1|13|G|1009
*
4WQR|1|13|U|1020
4WQR|1|13|G|1021
4WQR|1|13|G|1022
4WQR|1|13|G|1023

Current chains

Chain 13

16S ribosomal RNA

Nearby chains