IL_4WQU_163

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_163 not in the Motif Atlas

Geometric match to IL_5H1K_001

Geometric discrepancy: 0.2239

The information below is about IL_5H1K_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4WQU|1|BA|G|988
4WQU|1|BA|C|989
4WQU|1|BA|C|990
*
4WQU|1|BA|G|1215
4WQU|1|BA|G|1216
4WQU|1|BA|C|1217

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BN

30S ribosomal protein S14 type Z

Chain BS

30S ribosomal protein S19