IL_4WQU_339

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4WQU|1|DA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_339 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1264

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4WQU|1|DA|G|662
4WQU|1|DA|A|663
4WQU|1|DA|G|664
4WQU|1|DA|A|665
4WQU|1|DA|G|666
*
4WQU|1|DA|U|740
4WQU|1|DA|G|741
4WQU|1|DA|G|742
4WQU|1|DA|U|743

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DF

30S ribosomal protein S6

Chain DO

30S ribosomal protein S15

Chain DR

30S ribosomal protein S18