IL_4WQU_357

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGG*UCAGCA

Length

9 nucleotides

Bulged bases

4WQU|1|DA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQU_357 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.265

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4WQU|1|DA|U|1056
4WQU|1|DA|G|1057
4WQU|1|DA|G|1058
*
4WQU|1|DA|U|1199
4WQU|1|DA|C|1200
4WQU|1|DA|A|1201
4WQU|1|DA|G|1202
4WQU|1|DA|C|1203
4WQU|1|DA|A|1204

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14 type Z