IL_4WQY_040

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

4WQY|1|AA|A|1092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_040 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.5188

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4WQY|1|AA|C|1089
4WQY|1|AA|G|1090
4WQY|1|AA|A|1091
4WQY|1|AA|A|1092
4WQY|1|AA|G|1093
4WQY|1|AA|A|1094
4WQY|1|AA|C|1095
4WQY|1|AA|A|1096
4WQY|1|AA|G|1097
4WQY|1|AA|C|1098
*
4WQY|1|AA|G|1153
4WQY|1|AA|U|1154
4WQY|1|AA|C|1155
4WQY|1|AA|G|1156
4WQY|1|AA|A|1157
4WQY|1|AA|G|1158

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L6

Chain AK

50S ribosomal protein L10