IL_4WQY_046

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4WQY|1|AA|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_046 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0513

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4WQY|1|AA|C|1253
4WQY|1|AA|G|1254
4WQY|1|AA|A|1255
4WQY|1|AA|U|1256
4WQY|1|AA|G|1257
4WQY|1|AA|A|1258
4WQY|1|AA|A|1259
4WQY|1|AA|G|1260
*
4WQY|1|AA|U|1280
4WQY|1|AA|G|1281
4WQY|1|AA|G|1282
4WQY|1|AA|A|1283
4WQY|1|AA|G|1284

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20