IL_4WQY_070

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

4WQY|1|AA|C|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_070 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4WQY|1|AA|C|1868
4WQY|1|AA|C|1869
4WQY|1|AA|G|1870
4WQY|1|AA|G|1871
*
4WQY|1|AA|C|1924
4WQY|1|AA|G|1925

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA