IL_4WQY_076

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WQY|1|AA|A|1960, 4WQY|1|AA|U|1966, 4WQY|1|AA|U|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_076 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1157

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4WQY|1|AA|C|1956
4WQY|1|AA|G|1957
4WQY|1|AA|A|1958
4WQY|1|AA|A|1959
4WQY|1|AA|A|1960
4WQY|1|AA|U|1961
4WQY|1|AA|U|1962
4WQY|1|AA|C|1963
4WQY|1|AA|C|1964
4WQY|1|AA|U|1965
4WQY|1|AA|U|1966
4WQY|1|AA|G|1967
*
4WQY|1|AA|C|1983
4WQY|1|AA|C|1984
4WQY|1|AA|U|1985
4WQY|1|AA|G|1986

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BX

Transfer RNA; tRNA