IL_4WQY_139

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_139 not in the Motif Atlas

Geometric match to IL_4LFB_020

Geometric discrepancy: 0.0981

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4WQY|1|BA|C|504
4WQY|1|BA|G|505
4WQY|1|BA|G|506
4WQY|1|BA|C|507
4WQY|1|BA|C|508
4WQY|1|BA|A|509
4WQY|1|BA|A|510
4WQY|1|BA|C|511
*
4WQY|1|BA|G|540
4WQY|1|BA|G|541

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12