IL_4WQY_172

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4WQY|1|BA|C|1400, 4WQY|1|BA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_172 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0903

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4WQY|1|BA|C|1399
4WQY|1|BA|C|1400
4WQY|1|BA|G|1401
*
4WQY|1|BA|C|1501
4WQY|1|BA|A|1502
4WQY|1|BA|A|1503
4WQY|1|BA|G|1504

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BV

mRNA

Chain BX

Transfer RNA; tRNA

Chain BZ

50S ribosomal protein L9,Elongation factor G