IL_4WQY_193

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WQY|1|CA|U|504, 4WQY|1|CA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_193 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0581

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WQY|1|CA|G|481
4WQY|1|CA|A|482
4WQY|1|CA|A|483
4WQY|1|CA|C|484
*
4WQY|1|CA|G|496
4WQY|1|CA|A|497
4WQY|1|CA|G|498
4WQY|1|CA|U|499
4WQY|1|CA|G|500
4WQY|1|CA|A|501
4WQY|1|CA|A|502
4WQY|1|CA|A|503
4WQY|1|CA|U|504
4WQY|1|CA|A|505
4WQY|1|CA|G|506
4WQY|1|CA|A|507
4WQY|1|CA|G|508
4WQY|1|CA|C|509

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CW

50S ribosomal protein L22

Chain CY

50S ribosomal protein L24