IL_4WQY_338

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGC,GCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_338 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1931

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

4WQY|1|DA|U|997
4WQY|1|DA|G|998
4WQY|1|DA|C|999
*
4WQY|1|DA|G|1042
4WQY|1|DA|C|1043
4WQY|1|DA|A|1044

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14 type Z