IL_4WQY_343

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

4WQY|1|DA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_343 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.2949

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4WQY|1|DA|C|1051
4WQY|1|DA|U|1052
4WQY|1|DA|G|1053
4WQY|1|DA|C|1054
4WQY|1|DA|A|1055
4WQY|1|DA|U|1056
*
4WQY|1|DA|A|1204
4WQY|1|DA|U|1205
4WQY|1|DA|G|1206
4WQY|1|DA|G|1207

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DC

30S ribosomal protein S3

Chain DJ

30S ribosomal protein S10

Chain DN

30S ribosomal protein S14 type Z