IL_4WQY_372

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

4WQY|1|BA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_372 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.2865

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

4WQY|1|BA|U|921
4WQY|1|BA|G|922
4WQY|1|BA|A|923
*
4WQY|1|BA|U|1393
4WQY|1|BA|A|1394
4WQY|1|BA|C|1395
4WQY|1|BA|A|1396

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BE

30S ribosomal protein S5

Chain BV

mRNA