IL_4WQY_377

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_377 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3745

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WQY|1|CA|G|1855
4WQY|1|CA|G|1856
4WQY|1|CA|G|1857
4WQY|1|CA|G|1858
4WQY|1|CA|A|1859
4WQY|1|CA|G|1860
*
4WQY|1|CA|C|1882
4WQY|1|CA|G|1883
4WQY|1|CA|A|1884
4WQY|1|CA|A|1885
4WQY|1|CA|C|1886
4WQY|1|CA|C|1887

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L28

Chain CC

50S ribosomal protein L1