IL_4WQY_379

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

4WQY|1|CA|G|2112, 4WQY|1|CA|U|2113, 4WQY|1|CA|G|2116, 4WQY|1|CA|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WQY_379 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2565

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4WQY|1|CA|G|2110
4WQY|1|CA|C|2111
4WQY|1|CA|G|2112
4WQY|1|CA|U|2113
4WQY|1|CA|A|2114
4WQY|1|CA|G|2115
4WQY|1|CA|G|2116
4WQY|1|CA|A|2117
4WQY|1|CA|U|2118
4WQY|1|CA|A|2119
4WQY|1|CA|G|2120
4WQY|1|CA|G|2121
*
4WQY|1|CA|C|2177
4WQY|1|CA|C|2178
4WQY|1|CA|C|2179

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L1