IL_4WR6_040

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WR6_040 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4WR6|1|13|G|774||||P_1
4WR6|1|13|G|775||||P_1
4WR6|1|13|G|776||||P_1
4WR6|1|13|A|777||||P_1
4WR6|1|13|G|778||||P_1
*
4WR6|1|13|U|804||||P_1
4WR6|1|13|C|805||||P_1

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2I

30S ribosomal protein S11