IL_4WR6_146

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WR6_146 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3485

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4WR6|1|14|G|1855||||P_1
4WR6|1|14|G|1856||||P_1
4WR6|1|14|G|1857||||P_1
4WR6|1|14|G|1858||||P_1
4WR6|1|14|A|1859||||P_1
4WR6|1|14|G|1860||||P_1
*
4WR6|1|14|C|1882||||P_1
4WR6|1|14|G|1883||||P_1
4WR6|1|14|A|1884||||P_1
4WR6|1|14|A|1885||||P_1
4WR6|1|14|C|1886||||P_1
4WR6|1|14|C|1887||||P_1

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain F5

50S ribosomal protein L28