3D structure

PDB id
4WR6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CAG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WR6_373 not in the Motif Atlas
Homologous match to IL_5E81_376
Geometric discrepancy: 0.296
The information below is about IL_5E81_376
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86319.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
269

Unit IDs

4WR6|1|1L|C|29||||P_1
4WR6|1|1L|A|30||||P_1
4WR6|1|1L|G|31||||P_1
*
4WR6|1|1L|C|41||||P_1
4WR6|1|1L|U|42||||P_1
4WR6|1|1L|G|43||||P_1

Current chains

Chain 1L
tRNA-Tyr

Nearby chains

Chain 1G
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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