IL_4WRA_175

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_175 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3935

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4WRA|1|14|C|2651
4WRA|1|14|C|2652
4WRA|1|14|U|2653
4WRA|1|14|A|2654
4WRA|1|14|G|2655
4WRA|1|14|U|2656
4WRA|1|14|A|2657
4WRA|1|14|C|2658
*
4WRA|1|14|G|2663
4WRA|1|14|G|2664
4WRA|1|14|A|2665
4WRA|1|14|C|2666
4WRA|1|14|C|2667
4WRA|1|14|G|2668
4WRA|1|14|G|2669

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6