IL_4WRA_380

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUCGUG*CGGC

Length

10 nucleotides

Bulged bases

4WRA|1|13|G|64, 4WRA|1|13|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_380 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3978

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4WRA|1|13|G|61
4WRA|1|13|U|62
4WRA|1|13|C|63
4WRA|1|13|G|64
4WRA|1|13|U|65
4WRA|1|13|G|66
*
4WRA|1|13|C|103
4WRA|1|13|G|104
4WRA|1|13|G|105
4WRA|1|13|C|106

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20