3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4WSD|1|13|U|244, 4WSD|1|13|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_013 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.0871
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4WSD|1|13|C|242
4WSD|1|13|A|243
4WSD|1|13|U|244
4WSD|1|13|C|245
4WSD|1|13|A|246
4WSD|1|13|G|247
*
4WSD|1|13|C|277
4WSD|1|13|G|278
4WSD|1|13|A|279
4WSD|1|13|C|280
4WSD|1|13|G|281
4WSD|1|13|A|282
4WSD|1|13|C|283
4WSD|1|13|G|284

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 3I
30S ribosomal protein S12
Chain 8I
30S ribosomal protein S17

Coloring options:


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