IL_4WSD_023
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4WSD|1|13|A|532, 4WSD|1|13|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_023 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.137
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WSD|1|13|G|515
4WSD|1|13|U|516
4WSD|1|13|G|517
4WSD|1|13|C|518
4WSD|1|13|C|519
4WSD|1|13|A|520
4WSD|1|13|G|521
*
4WSD|1|13|C|528
4WSD|1|13|G|529
4WSD|1|13|G|530
4WSD|1|13|U|531
4WSD|1|13|A|532
4WSD|1|13|A|533
4WSD|1|13|U|534
4WSD|1|13|A|535
4WSD|1|13|C|536
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 1K
- Transfer RNA; tRNA
- Chain 2E
- 30S ribosomal protein S3
- Chain 3E
- 30S ribosomal protein S4
- Chain 3I
- 30S ribosomal protein S12
- Chain 4K
- mRNA
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