IL_4WSD_056

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_056 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1069

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WSD|1|13|C|1303
4WSD|1|13|G|1304
4WSD|1|13|G|1305
4WSD|1|13|A|1306
4WSD|1|13|U|1307
4WSD|1|13|U|1308
*
4WSD|1|13|A|1329
4WSD|1|13|U|1330
4WSD|1|13|G|1331
4WSD|1|13|A|1332
4WSD|1|13|A|1333
4WSD|1|13|G|1334

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1F

30S ribosomal protein Thx

Chain 4I

30S ribosomal protein S13