IL_4WSD_144

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCCUG*CUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_144 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3655

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4WSD|1|14|G|2106
4WSD|1|14|C|2107
4WSD|1|14|C|2108
4WSD|1|14|U|2109
4WSD|1|14|G|2110
*
4WSD|1|14|C|2179
4WSD|1|14|U|2180
4WSD|1|14|G|2181
4WSD|1|14|G|2182
4WSD|1|14|C|2183

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 3L

Transfer RNA; tRNA