IL_4WSD_340

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCCGCC*GGUGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_340 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.3908

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.2

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4WSD|1|1H|C|2138
4WSD|1|1H|C|2139
4WSD|1|1H|C|2140
4WSD|1|1H|G|2141
4WSD|1|1H|C|2142
4WSD|1|1H|C|2143
*
4WSD|1|1H|G|2148
4WSD|1|1H|G|2149
4WSD|1|1H|U|2150
4WSD|1|1H|G|2151
4WSD|1|1H|G|2152
4WSD|1|1H|G|2153

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11